Package: simecol 0.8-14
simecol: Simulation of Ecological (and Other) Dynamic Systems
An object oriented framework to simulate ecological (and other) dynamic systems. It can be used for differential equations, individual-based (or agent-based) and other models as well. It supports structuring of simulation scenarios (to avoid copy and paste) and aims to improve readability and re-usability of code.
Authors:
simecol_0.8-14.tar.gz
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simecol_0.8-14.tgz(r-4.4-x86_64)simecol_0.8-14.tgz(r-4.4-arm64)simecol_0.8-14.tgz(r-4.3-x86_64)simecol_0.8-14.tgz(r-4.3-arm64)
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simecol_0.8-14.tgz(r-4.4-emscripten)simecol_0.8-14.tgz(r-4.3-emscripten)
simecol.pdf |simecol.html✨
simecol/json (API)
NEWS
| # Install 'simecol' in R: |
| install.packages('simecol', repos = c('https://tpetzoldt.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tpetzoldt/simecol/issues
- CA - Stochastic Cellular Automaton
- chemostat - Chemostat Model
- conway - The Classical Coway's Game of Life
- diffusion - A Random Walk Particle Diffusion Model
- lv - Lotka-Volterra Predator-Prey Model
- lv3 - Lotka-Volterra-Type Model with Resource, Prey and Predator
- upca - The Uniform Period Chaotic Amplitude Model
Last updated 3 months agofrom:9fbb1db02f. Checks:ERROR: 1 WARNING: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | FAIL | Oct 23 2024 |
| R-4.5-win-x86_64 | WARNING | Oct 23 2024 |
| R-4.5-linux-x86_64 | WARNING | Oct 23 2024 |
| R-4.4-win-x86_64 | WARNING | Oct 23 2024 |
| R-4.4-mac-x86_64 | WARNING | Oct 23 2024 |
| R-4.4-mac-aarch64 | WARNING | Oct 23 2024 |
| R-4.3-win-x86_64 | WARNING | Oct 23 2024 |
| R-4.3-mac-x86_64 | WARNING | Oct 23 2024 |
| R-4.3-mac-aarch64 | WARNING | Oct 23 2024 |
Exports:addtoenvalpha2rhoapproxTimeapproxTime1as.listas.simObjcoefcoercedevianceeditIniteditParmseditTimeseightneighborseightneighboursequationsequations<-fitOdeModelfromtobygridModelinitinit<-initfuncinitfunc<-initializeinputsinputs<-iterationmainmain<-mixNamedVecneighborsneighboursobserverobserver<-odeModeloutout<-p.constrainp.unconstrainparmsparms<-pcupcuseriespeaksplotprintrho2alpharwalkModelsEditseedfillshowsimsimObjsolversolver<-ssqOdeModelsummarytimestimes<-
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Simulation of Ecological (and Other) Dynamic Systems | simecol-package gridModel-class indbasedModel-class odeModel-class rwalkModel-class simecol simObj simObj-class |
| Add Functions from a Non-nested List of Named Functions to a Common Environment | addtoenv |
| Linear Interpolation with Complete Matrices or Data Frames | approxTime approxTime1 |
| Coerce simObj Objects to Lists and Vice-Versa | as.list,simObj-method as.simObj as.simObj,list-method coerce,list,simObj-method coerce,simObj,list-method |
| Stochastic Cellular Automaton | CA |
| Chemostat Model | chemostat |
| The Classical Coway's Game of Life | conway |
| A Random Walk Particle Diffusion Model | diffusion |
| Edit `parms', `init' or `times' Slot of `simecol' Objects | editInit editInit,simObj-method editInit-methods editParms editParms,simObj-method editParms-methods editTimes editTimes,simObj-method editTimes-methods |
| Count Number of Neighbours in a Rectangular Cellular Grid. | eightneighbors eightneighbours |
| Parameter Fitting for odeModel Objects | fitOdeModel |
| Create Regular Sequence from 'from-to-by' Vector | fromtoby |
| Methods for Function `initialize' in Package `simecol' | initialize,simObj-method initialize-methods |
| Discrete Simulation | iteration iteration,gridModel-method iteration,numeric-method iteration,odeModel-method iteration,simObj-method iteration-methods |
| Helpful Union Classes | functionOrcharacter-class functionOrNULL-class listOrdata.frame-class listOrNULL-class numericOrlist-class |
| Lotka-Volterra Predator-Prey Model | lv |
| Lotka-Volterra-Type Model with Resource, Prey and Predator | lv3 |
| Mix Two Named Vectors, Resolving Name Conflicts | mixNamedVec |
| Class of Fitted Model Parameters | modelFit-class |
| Show Results of Model Fits | $ $,modelFit-method coef,modelFit-method deviance,modelFit-method summary,modelFit-method [ [,modelFit-method [[ [[,modelFit-method |
| Count Number of Neighbours on a Rectangular Grid. | neighbors neighbours |
| Get or Set an Observer Functions to an `simObj' Object | observer observer,simObj-method observer-methods observer<- observer<-,simObj-method observer<--methods |
| Generating-functions (Constructors) to Create Objects of Classes `odeModel', `rwalkModel' and `gridModel'. | gridModel indbasedModel odeModel rwalkModel |
| Transform Data Between Unconstrained and Box-constrained Scale | p.constrain p.unconstrain |
| Accessor Functions for `simObj' Objects | equations equations,simObj-method equations-methods equations<- equations<-,simObj-method equations<--methods init init,simObj-method init-methods init<- init<-,gridModel,ANY-method init<-,gridModel,matrix-method init<-,simObj,ANY-method init<--methods initfunc initfunc,simObj-method initfunc-methods initfunc<- initfunc<-,simObj-method initfunc<--methods inputs inputs,simObj-method inputs-methods inputs<- inputs<-,simObj-method inputs<--methods main main,simObj-method main-methods main<- main<-,simObj-method main<--methods out out,gridModel-method out,odeModel-method out,simObj-method out-methods out<- out<-,simObj-method out<--methods parms parms,simObj-method parms-methods parms<- parms<-,simObj-method parms<--methods solver solver,simObj-method solver-methods solver<- solver<-,simObj-method solver<--methods times times,simObj-method times-methods times<- times<-,simObj-method times<--methods |
| Generate Plackett Bivariate Random Numbers | alpha2rho pcu pcuseries rho2alpha |
| Find Peaks Within xy-Data | peaks |
| Methods for Function plot in Package `simecol' | plot,ANY,ANY-method plot,gridModel,missing-method plot,odeModel,missing-method plot,odeModel,odeModel-method plot,rwalkModel,missing-method plot,simObj,missing-method plot-methods |
| Methods for Function `print' in Package `simecol' | print,ANY-method print,simObj-method print-methods show,simObj-method |
| Simple editing | sEdit |
| Color Fill Algorithm | seedfill |
| Simulation of 'simObj' model objects | sim sim,gridModel-method sim,odeModel-method sim,simObj-method sim-methods |
| Sum of Squares Between odeModel and Data | ssqOdeModel |
| The Uniform Period Chaotic Amplitude Model | upca |
