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  "_id": "6a5b380d9baadeef8ab4cb7b",
  "Package": "simecol",
  "Version": "0.9-3",
  "Title": "Simulation of Ecological (and Other) Dynamic Systems",
  "Authors@R": "c(person(\"Thomas\",\"Petzoldt\", role = c(\"aut\", \"cre\"),\nemail = \"thomas.petzoldt@tu-dresden.de\",\ncomment = c(ORCID = \"0000-0002-4951-6468\")))",
  "LazyLoad": "yes",
  "Maintainer": "Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>",
  "Description": "An object oriented framework to simulate ecological (and\nother) dynamic systems. It can be used for differential\nequations, individual-based (or agent-based) and other models\nas well. It supports structuring of simulation scenarios (to\navoid copy and paste) and aims to improve readability and\nre-usability of code.",
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  "URL": "https://github.com/tpetzoldt/simecol/",
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  "Repository": "https://tpetzoldt.r-universe.dev",
  "Date/Publication": "2025-06-23 13:47:28 UTC",
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  "Author": "Thomas Petzoldt [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-4951-6468>)",
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    "alpha2rho",
    "approxTime",
    "approxTime1",
    "as.list",
    "as.simObj",
    "coef",
    "coerce",
    "deviance",
    "editInit",
    "editParms",
    "editTimes",
    "eightneighbors",
    "eightneighbours",
    "equations",
    "equations<-",
    "fitOdeModel",
    "fromtoby",
    "gridModel",
    "init",
    "init<-",
    "initfunc",
    "initfunc<-",
    "initialize",
    "inputs",
    "inputs<-",
    "iteration",
    "main",
    "main<-",
    "mixNamedVec",
    "neighbors",
    "neighbours",
    "observer",
    "observer<-",
    "odeModel",
    "out",
    "out<-",
    "p.constrain",
    "p.unconstrain",
    "parms",
    "parms<-",
    "pcu",
    "pcuseries",
    "peaks",
    "plot",
    "print",
    "rho2alpha",
    "rwalkModel",
    "sEdit",
    "seedfill",
    "show",
    "sim",
    "simObj",
    "solver",
    "solver<-",
    "ssqOdeModel",
    "summary",
    "times",
    "times<-"
  ],
  "_datasets": [
    {
      "name": "CA",
      "title": "Stochastic Cellular Automaton",
      "object": "CA",
      "file": "CA.rda",
      "class": [
        "gridModel"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "chemostat",
      "title": "Chemostat Model",
      "object": "chemostat",
      "file": "chemostat.rda",
      "class": [
        "odeModel"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "conway",
      "title": "The Classical Coway's Game of Life",
      "object": "conway",
      "file": "conway.rda",
      "class": [
        "gridModel"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "diffusion",
      "title": "A Random Walk Particle Diffusion Model",
      "object": "diffusion",
      "file": "diffusion.rda",
      "class": [
        "rwalkModel"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "lv",
      "title": "Lotka-Volterra Predator-Prey Model",
      "object": "lv",
      "file": "lv.rda",
      "class": [
        "odeModel"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "lv3",
      "title": "Lotka-Volterra-Type Model with Resource, Prey and Predator",
      "object": "lv3",
      "file": "lv3.rda",
      "class": [
        "odeModel"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "upca",
      "title": "The Uniform Period Chaotic Amplitude Model",
      "object": "upca",
      "file": "upca.rda",
      "class": [
        "odeModel"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "simecol-package",
      "title": "Simulation of Ecological (and Other) Dynamic Systems",
      "topics": [
        "simecol-package",
        "gridModel-class",
        "indbasedModel-class",
        "odeModel-class",
        "rwalkModel-class",
        "simecol",
        "simObj",
        "simObj-class"
      ]
    },
    {
      "page": "addtoenv",
      "title": "Add Functions from a Non-nested List of Named Functions to a Common Environment",
      "topics": [
        "addtoenv"
      ]
    },
    {
      "page": "approxTime",
      "title": "Linear Interpolation with Complete Matrices or Data Frames",
      "topics": [
        "approxTime",
        "approxTime1"
      ]
    },
    {
      "page": "as.simObj",
      "title": "Coerce simObj Objects to Lists and Vice-Versa",
      "topics": [
        "as.list,simObj-method",
        "as.simObj",
        "as.simObj,list-method",
        "coerce,list,simObj-method",
        "coerce,simObj,list-method"
      ]
    },
    {
      "page": "CA",
      "title": "Stochastic Cellular Automaton",
      "topics": [
        "CA"
      ]
    },
    {
      "page": "chemostat",
      "title": "Chemostat Model",
      "topics": [
        "chemostat"
      ]
    },
    {
      "page": "conway",
      "title": "The Classical Coway's Game of Life",
      "topics": [
        "conway"
      ]
    },
    {
      "page": "diffusion",
      "title": "A Random Walk Particle Diffusion Model",
      "topics": [
        "diffusion"
      ]
    },
    {
      "page": "editParms",
      "title": "Edit `parms', `init' or `times' Slot of `simecol' Objects",
      "topics": [
        "editInit",
        "editInit,simObj-method",
        "editInit-methods",
        "editParms",
        "editParms,simObj-method",
        "editParms-methods",
        "editTimes",
        "editTimes,simObj-method",
        "editTimes-methods"
      ]
    },
    {
      "page": "eightneighbours",
      "title": "Count Number of Neighbours in a Rectangular Cellular Grid.",
      "topics": [
        "eightneighbors",
        "eightneighbours"
      ]
    },
    {
      "page": "fitOdeModel",
      "title": "Parameter Fitting for odeModel Objects",
      "topics": [
        "fitOdeModel"
      ]
    },
    {
      "page": "fromtoby",
      "title": "Create Regular Sequence from 'from-to-by' Vector",
      "topics": [
        "fromtoby"
      ]
    },
    {
      "page": "initialize-methods",
      "title": "Methods for Function `initialize' in Package `simecol'",
      "topics": [
        "initialize,simObj-method",
        "initialize-methods"
      ]
    },
    {
      "page": "iteration",
      "title": "Discrete Simulation",
      "topics": [
        "iteration",
        "iteration,gridModel-method",
        "iteration,numeric-method",
        "iteration,odeModel-method",
        "iteration,simObj-method",
        "iteration-methods"
      ]
    },
    {
      "page": "listOrNULL",
      "title": "Helpful Union Classes",
      "topics": [
        "functionOrcharacter-class",
        "functionOrNULL-class",
        "listOrdata.frame-class",
        "listOrNULL-class",
        "numericOrlist-class"
      ]
    },
    {
      "page": "lv",
      "title": "Lotka-Volterra Predator-Prey Model",
      "topics": [
        "lv"
      ]
    },
    {
      "page": "lv3",
      "title": "Lotka-Volterra-Type Model with Resource, Prey and Predator",
      "topics": [
        "lv3"
      ]
    },
    {
      "page": "mixNamedVec",
      "title": "Mix Two Named Vectors, Resolving Name Conflicts",
      "topics": [
        "mixNamedVec"
      ]
    },
    {
      "page": "modelFit",
      "title": "Class of Fitted Model Parameters",
      "topics": [
        "modelFit-class"
      ]
    },
    {
      "page": "modelFit-methods",
      "title": "Show Results of Model Fits",
      "topics": [
        "$",
        "$,modelFit-method",
        "coef,modelFit-method",
        "deviance,modelFit-method",
        "summary,modelFit-method",
        "[",
        "[,modelFit-method",
        "[[",
        "[[,modelFit-method"
      ]
    },
    {
      "page": "neighbours",
      "title": "Count Number of Neighbours on a Rectangular Grid.",
      "topics": [
        "neighbors",
        "neighbours"
      ]
    },
    {
      "page": "observer",
      "title": "Get or Set an Observer Functions to an `simObj' Object",
      "topics": [
        "observer",
        "observer,simObj-method",
        "observer-methods",
        "observer<-",
        "observer<-,simObj-method",
        "observer<--methods"
      ]
    },
    {
      "page": "odeModel",
      "title": "Generating-functions (Constructors) to Create Objects of Classes `odeModel', `rwalkModel' and `gridModel'.",
      "topics": [
        "gridModel",
        "indbasedModel",
        "odeModel",
        "rwalkModel"
      ]
    },
    {
      "page": "p.constrain",
      "title": "Transform Data Between Unconstrained and Box-constrained Scale",
      "topics": [
        "p.constrain",
        "p.unconstrain"
      ]
    },
    {
      "page": "parms",
      "title": "Accessor Functions for `simObj' Objects",
      "topics": [
        "equations",
        "equations,simObj-method",
        "equations-methods",
        "equations<-",
        "equations<-,simObj-method",
        "equations<--methods",
        "init",
        "init,simObj-method",
        "init-methods",
        "init<-",
        "init<-,gridModel,ANY-method",
        "init<-,gridModel,matrix-method",
        "init<-,simObj,ANY-method",
        "init<--methods",
        "initfunc",
        "initfunc,simObj-method",
        "initfunc-methods",
        "initfunc<-",
        "initfunc<-,simObj-method",
        "initfunc<--methods",
        "inputs",
        "inputs,simObj-method",
        "inputs-methods",
        "inputs<-",
        "inputs<-,simObj-method",
        "inputs<--methods",
        "main",
        "main,simObj-method",
        "main-methods",
        "main<-",
        "main<-,simObj-method",
        "main<--methods",
        "out",
        "out,gridModel-method",
        "out,odeModel-method",
        "out,simObj-method",
        "out-methods",
        "out<-",
        "out<-,simObj-method",
        "out<--methods",
        "parms",
        "parms,simObj-method",
        "parms-methods",
        "parms<-",
        "parms<-,simObj-method",
        "parms<--methods",
        "solver",
        "solver,simObj-method",
        "solver-methods",
        "solver<-",
        "solver<-,simObj-method",
        "solver<--methods",
        "times",
        "times,simObj-method",
        "times-methods",
        "times<-",
        "times<-,simObj-method",
        "times<--methods"
      ]
    },
    {
      "page": "pcuseries",
      "title": "Generate Plackett Bivariate Random Numbers",
      "topics": [
        "alpha2rho",
        "pcu",
        "pcuseries",
        "rho2alpha"
      ]
    },
    {
      "page": "peaks",
      "title": "Find Peaks Within xy-Data",
      "topics": [
        "peaks"
      ]
    },
    {
      "page": "plot-methods",
      "title": "Methods for Function plot in Package `simecol'",
      "topics": [
        "plot,ANY,ANY-method",
        "plot,gridModel,missing-method",
        "plot,odeModel,missing-method",
        "plot,odeModel,odeModel-method",
        "plot,rwalkModel,missing-method",
        "plot,simObj,missing-method",
        "plot-methods"
      ]
    },
    {
      "page": "print-methods",
      "title": "Methods for Function `print' in Package `simecol'",
      "topics": [
        "print,ANY-method",
        "print,simObj-method",
        "print-methods",
        "show,simObj-method"
      ]
    },
    {
      "page": "sEdit",
      "title": "Simple editing",
      "topics": [
        "sEdit"
      ]
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